ATLIGATOR

Web interface of the ATLas based LIGAnd binding ediTOR

Find more resources in video form about the usage of ATLIGATOR web on our YouTube channel!

Structures

Image of a protein structure complex containing a protein and a peptide ligand in cartoon representation.

Collections of PDB structures providing the input for the generation of atlases and the discovery of pockets.

Explore

Atlases

Image of an Atlas visualized with Ca and Cbeta coordinates of ligand and binder residues

Discover pair-wise interaction patterns between amino acid residues, forming the basis for pocket discovery and binder design.

Explore

Pockets

Image of a pocket visualized with all atoms

Discover, inspect, and annotate binding pockets automatically discovered by an atlas based itemset analysis.

Explore

Scaffolds

Image of a protein structure binding a peptide ligand.

Define scaffold PDB structures for the pocket-based or manual design of novel binders for given ligands.

Create Explore

Designs

Image of a protein-peptide complex with detailed interactions sites highlighted.

Utilize the knowledge of atlases and pockets for the design of novel binders.

Create Explore