Example
This is a collection of links to showcase the design example explained in the accompaning scientific paper (Kynast & Höcker).
Atlas
a.118 (alpha-alpha superhelix)
(43645 datapoints; last modified: by josef)
LEU Atlas Map
PocketCollection
a.118 (alpha-alpha superhelix)
(139 pockets in total; last modified: by josef)
LEU: DHL
Scaffold
Example scaffold: dArmRP / KR5 binder / pdb: 5AEI
This scaffold was used in the example workflow within the main publication of Atligator. It originates from the pdb structure 5AEI and was truncated to chains A and D and relaxed with Rosetta 3.10.
(10 binder groups,
1 ligand groups,
last modified:
by josef)
Design
Example design: KR5 to KRKRKIKRKR
(last modified: by josef)