ATLIGATOR

Derived from Atlas:

d.19.1 (MHC antigen-recognition domain)

Maximum Pockets per Ligand Residue:

Minimum Pocket Size:

Confidence Threshold:

Support Threshold:

Cardinality Base:

Distance Factor:

Orientation Factor:

Secondary Orientation Factor:

Variance Threshold:

Mined pockets and their support values, grouped by ligand:

ALA	EYY (10% or 118 of 1162)	WYY (5% or 61 of 1162)	EKYY (4% or 57 of 1162)	EWYY (4% or 48 of 1162)	EYYY (3% or 36 of 1162)	EKWYY (2% or 26 of 1162)	DLV (1% or 21 of 1162)	NDV (1% or 18 of 1162)	KYYY (1% or 16 of 1162)	EKYYY (1% or 14 of 1162)
ARG	EYY (8% or 106 of 1195)	REE (6% or 83 of 1195)	REY (6% or 83 of 1195)	EEYY (6% or 75 of 1195)	REYY (5% or 64 of 1195)	RDE (5% or 64 of 1195)	RDS (5% or 62 of 1195)	DDS (5% or 61 of 1195)	TYY (4% or 59 of 1195)	ETY (4% or 58 of 1195)
ASN	QEY (9% or 114 of 1181)	QQY (8% or 99 of 1181)	QFY (6% or 82 of 1181)	QQEWY (6% or 79 of 1181)	QQEFWY (4% or 58 of 1181)	QSY (4% or 52 of 1181)	ESY (4% or 48 of 1181)	QQESY (3% or 36 of 1181)	QQESWY (2% or 31 of 1181)	QQEFSY (2% or 30 of 1181)
ASP	RRQ (3% or 43 of 1113)	RNS (2% or 29 of 1113)	HYY (2% or 25 of 1113)	RGS (2% or 24 of 1113)	RNK (2% or 23 of 1113)	HTY (1% or 22 of 1113)	RNGS (1% or 21 of 1113)	RRY (1% or 19 of 1113)	TYY (1% or 18 of 1113)	HKY (1% or 16 of 1113)
CYS	DWY (21% or 14 of 64)	KWY (14% or 9 of 64)	TWY (14% or 9 of 64)	KTW (14% or 9 of 64)	DLTW (12% or 8 of 64)	KTWY (12% or 8 of 64)	DLTWY (10% or 7 of 64)	DLKTW (10% or 7 of 64)	RDY (10% or 7 of 64)	DLKTWY (9% or 6 of 64)
GLN	DET (4% or 54 of 1227)	AET (4% or 51 of 1227)	ARY (3% or 46 of 1227)	EYY (3% or 45 of 1227)	QFY (3% or 45 of 1227)	NEY (3% or 44 of 1227)	ETY (3% or 44 of 1227)	NYY (3% or 43 of 1227)	ADEHST (2% or 36 of 1227)	ADEHSST (2% or 32 of 1227)
GLU	RYY (9% or 156 of 1724)	RNY (5% or 89 of 1724)	RWY (4% or 72 of 1724)	NYY (4% or 71 of 1724)	EYY (4% or 70 of 1724)	RHY (4% or 69 of 1724)	RRY (3% or 68 of 1724)	NHY (3% or 65 of 1724)	RLY (3% or 65 of 1724)	RYYY (3% or 59 of 1724)
GLY	EYY (3% or 34 of 1031)	WYY (1% or 17 of 1031)	EWYY (1% or 14 of 1031)	RYY (1% or 13 of 1031)
HIS	EFY (5% or 34 of 569)	NQE (4% or 23 of 569)	NEY (3% or 22 of 569)	EFTY (3% or 20 of 569)	DDE (3% or 20 of 569)	DET (3% or 20 of 569)	RDE (3% or 19 of 569)	EEY (3% or 19 of 569)	NHY (3% or 18 of 569)	DEE (3% or 18 of 569)
ILE	EYY (10% or 64 of 598)	YYY (10% or 62 of 598)	WYY (10% or 61 of 598)	TYY (9% or 55 of 598)	EYYY (9% or 54 of 598)	KYY (8% or 51 of 598)	TWY (8% or 50 of 598)	TWYY (7% or 43 of 598)	WYYY (6% or 40 of 598)	EKYY (6% or 39 of 598)
LEU	KYY (15% or 244 of 1572)	EYY (11% or 180 of 1572)	WYY (10% or 166 of 1572)	LYY (10% or 165 of 1572)	TWY (10% or 163 of 1572)	TYY (9% or 156 of 1572)	KTY (9% or 152 of 1572)	LWY (9% or 151 of 1572)	EKYY (8% or 137 of 1572)	EMFYYV (7% or 124 of 1572)
LYS	EYY (6% or 69 of 1083)	EWY (5% or 55 of 1083)	EEY (4% or 52 of 1083)	EEWYY (3% or 42 of 1083)	DDY (3% or 42 of 1083)	KWY (3% or 40 of 1083)	NDD (3% or 40 of 1083)	QEY (3% or 39 of 1083)	NND (3% or 38 of 1083)	EEKWYY (2% or 30 of 1083)
MET	TYY (20% or 86 of 413)	STYY (17% or 71 of 413)	TWYY (15% or 63 of 413)	STWYY (13% or 55 of 413)	KTWYY (11% or 47 of 413)	LSTWYY (11% or 46 of 413)	FSTWYY (10% or 43 of 413)	KSTWYY (9% or 41 of 413)	LKTWYY (9% or 40 of 413)	LKSTWYY (8% or 36 of 413)
PHE	QFY (8% or 69 of 834)	NFV (7% or 66 of 834)	FYV (7% or 60 of 834)	NQF (6% or 57 of 833)	NFY (6% or 54 of 834)	WYY (6% or 51 of 834)	QYY (5% or 49 of 834)	NQFY (5% or 49 of 834)	LYY (5% or 49 of 834)	WYYY (5% or 43 of 834)
PRO	NFY (5% or 49 of 836)	NFYYY (4% or 35 of 835)	NFYYYY (3% or 29 of 836)	LYV (2% or 24 of 836)	NLV (2% or 22 of 836)	IYY (2% or 21 of 836)	NLF (2% or 20 of 836)	LFV (2% or 20 of 836)	FYV (2% or 20 of 836)	LFY (2% or 18 of 836)
SER	EYY (8% or 120 of 1350)	EKYY (7% or 106 of 1350)	EKYYY (6% or 92 of 1350)	WYY (6% or 87 of 1350)	EKWYYY (4% or 63 of 1350)	RYY (3% or 49 of 1350)	NHY (3% or 46 of 1350)	REW (3% or 44 of 1350)	RWYY (3% or 44 of 1350)	REWYY (2% or 36 of 1350)
THR	KWV (4% or 57 of 1231)	NDV (4% or 57 of 1231)	NWV (4% or 55 of 1231)	DTV (4% or 54 of 1231)	KSW (4% or 51 of 1231)	NDEV (3% or 47 of 1231)	NKSW (3% or 46 of 1231)	DKT (3% or 44 of 1231)	DKV (3% or 44 of 1231)	NDELV (3% or 40 of 1231)
TRP	QHW (12% or 44 of 358)	QEHW (10% or 36 of 358)	RYY (9% or 33 of 358)	QEHPW (7% or 26 of 357)	HSY (7% or 26 of 357)	HYY (7% or 26 of 357)	HLY (6% or 23 of 358)	RLY (6% or 22 of 358)	LYY (6% or 22 of 358)	RLYY (5% or 19 of 358)
TYR	WYY (7% or 94 of 1239)	TYY (7% or 91 of 1239)	YYY (6% or 76 of 1239)	ITW (6% or 75 of 1239)	RLY (5% or 74 of 1239)	TWYY (5% or 71 of 1239)	KWYY (5% or 68 of 1239)	KTWYY (4% or 58 of 1239)	TWYYY (4% or 58 of 1239)	ANGIFFFFTW (2% or 36 of 1239)
VAL	TYY (12% or 133 of 1027)	DTY (11% or 118 of 1027)	DTYY (10% or 104 of 1027)	TWY (10% or 103 of 1027)	TWYY (8% or 92 of 1027)	KYY (8% or 91 of 1027)	DLTYY (8% or 86 of 1027)	DTW (8% or 83 of 1027)	DTWY (7% or 74 of 1027)	DKTYY (7% or 72 of 1027)